Producing polished prokaryotic pangenomes with the Panaroo pipeline
نویسندگان
چکیده
منابع مشابه
Endosymbiotic gene transfer from prokaryotic pangenomes: Inherited chimerism in eukaryotes.
Endosymbiotic theory in eukaryotic-cell evolution rests upon a foundation of three cornerstone partners--the plastid (a cyanobacterium), the mitochondrion (a proteobacterium), and its host (an archaeon)--and carries a corollary that, over time, the majority of genes once present in the organelle genomes were relinquished to the chromosomes of the host (endosymbiotic gene transfer). However, not...
متن کاملThe Prokaryotic Genome Annotation Pipeline
Contact: [email protected] NCBI Handout Series | Prokaryotic Genome Annotation Pipeline | Last Updated on May 25, 2017 Introduction Genome annotation is a complex process that includes prediction of protein-coding genes and other functional genome units, i.e., structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, as well as trans...
متن کاملProkaryotic Genome Annotation Pipeline
The process of annotating prokaryotic genomes includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons, and other mobile elements. Bacterial and archaeal genomes have the considerable advantage of usually lacking introns, which subs...
متن کاملNCBI prokaryotic genome annotation pipeline
Recent technological advances have opened unprecedented opportunities for large-scale sequencing and analysis of populations of pathogenic species in disease outbreaks, as well as for large-scale diversity studies aimed at expanding our knowledge across the whole domain of prokaryotes. To meet the challenge of timely interpretation of structure, function and meaning of this vast genetic informa...
متن کاملA computational genomics pipeline for prokaryotic sequencing projects
MOTIVATION New sequencing technologies have accelerated research on prokaryotic genomes and have made genome sequencing operations outside major genome sequencing centers routine. However, no off-the-shelf solution exists for the combined assembly, gene prediction, genome annotation and data presentation necessary to interpret sequencing data. The resulting requirement to invest significant res...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: Genome Biology
سال: 2020
ISSN: 1474-760X
DOI: 10.1186/s13059-020-02090-4